PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024494.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 256aa    MW: 28438.8 Da    PI: 4.8064
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024494.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.52.2e-54811851102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw+++   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrt +k+diaaa+trtdi+dflvdiv
  Do024494.1  81 QLQQFWAERladIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTXQKNDIAAAITRTDIYDFLVDIV 179
                 89*****98888*************************************************************************************** PP

       NF-YC  97 prdelk 102
                 prde+k
  Do024494.1 180 PRDEMK 185
                 ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.48E-3344175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3695167IPR009072Histone-fold
PfamPF008087.7E-20103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEPSSQPQTA MGVAAGGSQV YPAPAYPPAA TIAAPAAVPP AGLQPGQPFP ANPAQMSAQH  60
QIVYQQAQQF HQQLQQQQQR QLQQFWAERL ADIEQTTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVVF AKACEIFILE LTLRSWMHTE ENKRRTXQKN DIAAAITRTD IYDFLVDIVP  180
RDEMKEEGVG LPRAGLPPMG APADAYPYNY MPQQQVPGAG MVYGAQQGHP VTYLWQEPPE  240
QQEQPPEEQQ SLHESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-41711818119HapE
4g92_C4e-41711818119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTXQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966318.11e-137PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG78e-70NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0H3U6T21e-138A0A0H3U6T2_CYNDA; Nuclear factor Y subunit C
STRINGSi007127m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-69nuclear factor Y, subunit C2